Does the speed of the ribosome correlate with mathematical properties of the genetic code?
Institute for Medical Informatics
University of Applied Sciences, Mannheim, Germany
Ribosome profiling  is a relatively new technique that allows measuring a
correlate of the average dwell time of the ribosome at the codons of mRNA
strands with sub-codon resolution. Variations of the density of ribosome
footprint counts represent differences in the speed of the ribosome .
In this talk we will present initial results on the question whether the
speed of the ribosome correlates with mathematical properties of the genetic
code, as those arising from recent mathematical models of the genetic code
[3,4] and the theory of maximal self-complementary circular codes .
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Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using
Ribosome Profiling, Science 324 (5924): 218-223, 2009
- N.T. Ingolia, L.F. Lareau, J.S. Weissman: Ribosome Profiling of Mouse
Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes, Cell 147: 789-802, 2011
- D.L. Gonzalez, S. Giannerini, R. Rosa: Strong short-range correlations
and dichotomic codon classes in coding DNA sequences, Phys Rev E Stat Nonlin Soft Matter Phys. 78(5 Pt 1):051918, 2008
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bijections of the genetic code, J.Theor.Biol.(2013), http://dx.doi.org/10.1016/j.jtbi.2013.07.027
- D.G. Arquès and C.J. Michel: A Complementary Circular Code in the Protein Coding Genes, J. Theoret. Biol. 182:45–58, 1996